PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G061500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 290aa    MW: 29919.8 Da    PI: 10.926
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G061500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30222278358
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                         D+++WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+++dp ++++tYeg+H+h
  Brast03G061500.1.p 222 DEFSWRKYGQKPIKGSPYPRGYYKCSTVkGCPARKHVERATDDPAMLVVTYEGDHRH 278
                         99***********************9888***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.5E-6182218IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.1E-31211279IPR003657WRKY domain
PROSITE profilePS5081130.526215281IPR003657WRKY domain
SuperFamilySSF1182908.76E-26217279IPR003657WRKY domain
SMARTSM007746.4E-36220280IPR003657WRKY domain
PfamPF031065.9E-26222278IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAVDLMGRGG GYSAPRGEQE QRAFQEAATA GLRSLELLVS SLSPRAAADR ATAAPLGEIA  60
DQTVSRFRRV INMLDRTGHA RFRRGPVVSS PAPSNPLPVS SSPTPAAAAG APPPKTLTLD  120
FTKPTKAASV TSTSFFSSVT AAGGGGEGSV SKGQGQVVVS SGKPPLAAGT KRKLQLQQPC  180
AHSDAAAAPC HCSSAKKRKS RASRRAVRVP ATGARPADIP GDEFSWRKYG QKPIKGSPYP  240
RGYYKCSTVK GCPARKHVER ATDDPAMLVV TYEGDHRHGA GGGPAPAAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-202172781474Probable WRKY transcription factor 4
2lex_A1e-202172781474Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G061500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046482e-68AP004648.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1449_H02.
GenBankAP0149642e-68AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCT8359582e-68CT835958.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI102B05, full insert sequence.
GenBankCT8359592e-68CT835959.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI103A11, full insert sequence.
GenBankCT8419362e-68CT841936.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103L12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571564.11e-127WRKY transcription factor WRKY51
SwissprotQ9SV154e-80WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLI1I2561e-126I1I256_BRADI; Uncharacterized protein
STRINGBRADI3G18580.11e-127(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.11e-41WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  3. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Ali MA,Wieczorek K,Kreil DP,Bohlmann H
    The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.
    PLoS ONE, 2014. 9(7): p. e102360
    [PMID:25033038]
  6. Jiang CH, et al.
    Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis.
    J. Exp. Bot., 2016. 67(1): p. 157-74
    [PMID:26433201]
  7. Ali MA, et al.
    Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis.
    J. Plant Physiol., 2018. 226: p. 12-21
    [PMID:29689430]