PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G064000.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

WOX

Protein Properties

Length: 236aa MW: 25516.8 Da PI: 7.7616

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G064000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.1	9.9e-16	27	87	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e +++ + l + +++V++WFqNrR + ++ Brast03G064000.1.p 27 RSRWAPKPEQILILESIFNSgMVNPAKDETARIRRLLerfgAVRDANVFYWFQNRRSRSRR 87 89***************99***********************************997 PP
2	Wus_type_Homeobox	105.2	4.3e-34	26	88	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++ Brast03G064000.1.p 26 ARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRRSRSRRR 88 689**********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.402	23	88	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-8	24	93	IPR009057	Homeodomain-like
SMART	SM00389	2.2E-5	25	92	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.41E-13	25	94	IPR009057	Homeodomain-like
Pfam	PF00046	1.7E-13	27	87	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MDHHSQAATP SQRAGCGEGA DQPAAARSRW APKPEQILIL ESIFNSGMVN PAKDETARIR 60 RLLERFGAVR DANVFYWFQN RRSRSRRRAR QLQLQHQLQL PSAHGGVTQY AGVSSAAAPV 120 ASAPAAATVA PHLLADVVGA GDDDLFAIPR QMGLMDHRYT DTSQLTYQQP GTIQVFINGA 180 AYEVPSAGAL DLAGTFGHDV ILVHSSGEIL PVNEHGVLMK NLQMGECYYM VSRSI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G064000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005249	6e-96	AP005249.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21.
GenBank	AP014964	6e-96	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	6e-96	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003571573.1	1e-120	WUSCHEL-related homeobox 10
Swissprot	A2YST1	6e-84	WOX10_ORYSI; WUSCHEL-related homeobox 10
Swissprot	Q6Z3L4	5e-84	WOX10_ORYSJ; WUSCHEL-related homeobox 10
TrEMBL	I1I285	1e-119	I1I285_BRADI; Uncharacterized protein
STRING	BRADI3G18800.1	1e-119	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	8e-28	WUSCHEL related homeobox 11

Link Out ? help Back to Top
Phytozome	Brast03G064000.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]