PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G066800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CO-like
Protein Properties Length: 260aa    MW: 26585.6 Da    PI: 6.2729
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G066800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.97.7e-071760542
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         C+ ++   + l+C  +   lC+ C  ++H        H++vpl
  Brast03G066800.1.p 17 GCAVCGVAAAALYCAADAAALCAPCDAAIHAAnplasrHQRVPL 60
                        5*****999*********************66899999999986 PP
2CCT639.2e-22172215144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R+a+++RY+eKr++R+F K+irY+sRKa+Ae RpRvKGrFvk+a
  Brast03G066800.1.p 172 RQAKVRRYREKREKRRFHKTIRYASRKAYAEARPRVKGRFVKRA 215
                         99****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.9E-141360IPR000315B-box-type zinc finger
PROSITE profilePS5011910.6511360IPR000315B-box-type zinc finger
PfamPF062031.4E-16172214IPR010402CCT domain
PROSITE profilePS5101716.192172214IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGSEGGSSSS GTSPNAGCAV CGVAAAALYC AADAAALCAP CDAAIHAANP LASRHQRVPL  60
MAAAATSGVY DLYGDLFAAD DEAVSASGVS SWPTPAPGQG SPNSSSSGFS NGGAERSLFE  120
LLSDADLMAA APLWMMMAQP GMEAWASPSE AAAAELQSLG GGGGGAMVGA DRQAKVRRYR  180
EKREKRRFHK TIRYASRKAY AEARPRVKGR FVKRAAAAEE DDSGMSAAEG DKFWLSFSDA  240
DGRDGFRAPP AYGVVPSSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176183RRYREKRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G066800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0683901e-38BT068390.1 Zea mays full-length cDNA clone ZM_BFb0159K08 mRNA, complete cds.
GenBankKJ7278881e-38KJ727888.1 Zea mays clone pUT5981 orphans transcription factor (Orphan319) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571579.11e-89zinc finger protein CONSTANS-LIKE 2
TrEMBLI1I2B43e-88I1I2B4_BRADI; Uncharacterized protein
STRINGBRADI3G19010.15e-89(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130662224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.14e-12CONSTANS-like 5