PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G074200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 574aa    MW: 62850.5 Da    PI: 6.7252
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G074200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.21.7e-28249305259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg+nWrKYGqK+vk+s+++rsYYrCt ++C +kkkve+   d++v+ei+Y+g+H he
  Brast03G074200.1.p 249 GDGFNWRKYGQKQVKSSDNSRSYYRCTNSSCLAKKKVEHYP-DGRVIEIIYRGTHSHE 305
                         6****************************************.***************8 PP
2WRKY101.64.5e-32420477259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve++a+d + +++tYeg+Hnh+
  Brast03G074200.1.p 420 SDGYRWRKYGQKIVKGNPNPRSYYRCTHDGCPVRKHVEKAADDINNMVVTYEGKHNHD 477
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-24238307IPR003657WRKY domain
SuperFamilySSF1182901.57E-22242307IPR003657WRKY domain
PROSITE profilePS5081120.977243307IPR003657WRKY domain
SMARTSM007742.5E-28248306IPR003657WRKY domain
PfamPF031061.3E-21250304IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-31413479IPR003657WRKY domain
SuperFamilySSF1182901.28E-27414479IPR003657WRKY domain
PROSITE profilePS5081133.132414479IPR003657WRKY domain
SMARTSM007748.2E-37419478IPR003657WRKY domain
PfamPF031061.2E-25421477IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MADGEPVAPA EGKRPAVEAA SAEAEKHPPP EPPESTSAET KPEKEVEMET EANEVGKAEP  60
KEMMETEASE VGKAEPKEMM EKEEAAEPKE AKPKEVKEAA EPKEKEKEAE PKEAVKVKVE  120
KKEKEKAEIG ATRRPPGSSP DAPILAVPMV AVPCFIAPPG FAGQFAMSHQ AALASVTAQA  180
HMQLQSPTSS AYSEGLPSPF PRPITPIAIR PLQQAPSVTQ GNVCRPMAER PSSSELKVHH  240
HQVAVNMVGD GFNWRKYGQK QVKSSDNSRS YYRCTNSSCL AKKKVEHYPD GRVIEIIYRG  300
THSHEPPEKT RFVKERLPHI NVSPRGEQAL RLVNTEIMES SRTQTPTSKK LNKTAVENSE  360
QQLFCSSDCE GDAGIKSEDE HPSAEPQPKR RIVEATTPNS SPVLRTVREQ KIIVQAGKMS  420
DGYRWRKYGQ KIVKGNPNPR SYYRCTHDGC PVRKHVEKAA DDINNMVVTY EGKHNHDQPF  480
KSSNESRDGS ISLITPAVTT TDQTVTVASI SDQKPPTSTQ KTADTESIKD TTLEHGGEKG  540
VESAQTLLTV TNPDDMKNSL LKDTSAVVPV QNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-264194791777Probable WRKY transcription factor 4
2lex_A2e-264194791777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G074200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571606.10.0probable WRKY transcription factor 32
TrEMBLI1I2I80.0I1I2I8_BRADI; Uncharacterized protein
STRINGBRADI3G19640.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.12e-65WRKY DNA-binding protein 4