PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G075100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 275aa    MW: 28091.4 Da    PI: 9.3845
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G075100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000192114123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C + F ++  L  H++ H
  Brast03G075100.1.p  92 FKCNYCQRKFYTSQALGGHQNAH 114
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.86E-789119No hitNo description
Gene3DG3DSA:3.30.160.608.9E-490118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.57292119IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEMGSSSRTA SMEVVEEGEE VQADNQAAKE ETEKAAPAAP PSPALELNLL GGLGSASAEA  60
DKGKGKAKDQ AAPSVEQKAA AGGGGENKRR MFKCNYCQRK FYTSQALGGH QNAHKRERSI  120
AKRVAAGGRG AGGGFYGGAA DPAMIPHHLR FPNLWPYTAA GRALLGARGP SYYGMGMPPP  180
PYHQPSFYAG AGLAAARAYN QLPAAEGYGG YGRSLFPEAA AVPVNNGIRW PAAGTTGAGS  240
SAGDGVVINE GGAGNKKEEI PSSSSGKLDL TLKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126133GGRGAGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G075100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703069e-40HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189195.13e-51zinc finger protein 6-like
TrEMBLA0A0Q3F9772e-81A0A0Q3F977_BRADI; Uncharacterized protein
STRINGBRADI3G19710.13e-82(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130642230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.13e-16zinc-finger protein 1