PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G092400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family BBR-BPC
Protein Properties Length: 319aa    MW: 35210.4 Da    PI: 10.2858
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G092400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind358.91e-10913181301
           GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki........rernlalsekkaavaerd...................maflq 62 
                         mdddgs   rn+g++ep    ++nlglqlmss++ +rd+k+        +++++        v+++                    m+f++
  Brast03G092400.1.p   1 MDDDGSLGmRNWGFFEPP--TRNNLGLQLMSSMPgDRDTKQllssspfiHQHHH--------VHPHAphhhphphlhpndappsmpMNFVH 81 
                         9*****999*******99..7899*****************7777777644433........222222223335777888*********** PP

           GAGA_bind  63 rdkalaernkalverdnkllalllvensla.....salpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekk 148
                         ++++++    a+++r++k+l+ ++  ++       + +p+g+++++gt+ +++lq++++   e+++   ++ e+++ + +ee+a  ++e +
  Brast03G092400.1.p  82 NEAWMHP---AHHPRESKILHAITPGHTGHvvhaaHPEPAGYGIIPGTHGLHTLQMMQKA--EPQPPLPPKDECISPPLVEENAGFVNELP 167
                         *******...***********999888877788888899*****************4433..33333367999****************** PP

           GAGA_bind 149 kkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttti 239
                          +kk+q+ ++pk++k kk+kk   ++ ++ +++ + +r++ +kk++++v+ng++lD s++P+PvC+CtGa++qCY+WG+GGWqSaCCttti
  Brast03G092400.1.p 168 PPKKKQQRRQPKSPKPKKPKKAA-APCEDGAPKPV-PRRRGPKKHVGMVINGIDLDLSRIPTPVCTCTGAQQQCYRWGAGGWQSACCTTTI 256
                         *********************55.55555555444.89***************************************************** PP

           GAGA_bind 240 SvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                         S+yPLP+stkr gaRiagrKmS+gafkk+LekLa+eGy+l+n++DLk++WAkHGtnkfvtir
  Brast03G092400.1.p 257 STYPLPMSTKRHGARIAGRKMSHGAFKKVLEKLAGEGYNLNNAIDLKTFWAKHGTNKFVTIR 318
                         *************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062175.4E-1181318IPR010409GAGA-binding transcriptional activator
SMARTSM012261.3E-1891318IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDDDGSLGMR NWGFFEPPTR NNLGLQLMSS MPGDRDTKQL LSSSPFIHQH HHVHPHAPHH  60
HPHPHLHPND APPSMPMNFV HNEAWMHPAH HPRESKILHA ITPGHTGHVV HAAHPEPAGY  120
GIIPGTHGLH TLQMMQKAEP QPPLPPKDEC ISPPLVEENA GFVNELPPPK KKQQRRQPKS  180
PKPKKPKKAA APCEDGAPKP VPRRRGPKKH VGMVINGIDL DLSRIPTPVC TCTGAQQQCY  240
RWGAGGWQSA CCTTTISTYP LPMSTKRHGA RIAGRKMSHG AFKKVLEKLA GEGYNLNNAI  300
DLKTFWAKHG TNKFVTIR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G092400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573748.10.0barley B recombinant-like protein A
SwissprotP0DH881e-134BBRA_ORYSJ; Barley B recombinant-like protein A
SwissprotP0DH891e-134BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBLI1I3230.0I1I323_BRADI; Uncharacterized protein
STRINGBRADI3G21380.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.24e-64basic pentacysteine1
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]