PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G103400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

LBD

Protein Properties

Length: 252aa MW: 26033.6 Da PI: 6.8468

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G103400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.4	2.7e-39	33	133	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkC+++C++apyf e+ +++fa+vhk+FGasnv+kll ++p +r da+ +++yeA+ar+rdPvyG+v++i++lqqq+++l Brast03G103400.1.p 33 PCGACKFLRRKCVSGCIFAPYFDTEHgAAHFAAVHKVFGASNVSKLLLQIPAPKRLDAVVTICYEAQARIRDPVYGCVSHIFSLQQQVANL 123 7*******************998879*********************************************************** PP DUF260 91 kaelallkee 100 +ael l+++ Brast03G103400.1.p 124 QAELTCLQTH 133 **998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.696	32	134	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-39	33	131	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MSGSTSVGSA SGSGGGGGGG RGIGGSGTVG GGPCGACKFL RRKCVSGCIF APYFDTEHGA 60 AHFAAVHKVF GASNVSKLLL QIPAPKRLDA VVTICYEAQA RIRDPVYGCV SHIFSLQQQV 120 ANLQAELTCL QTHLATLELP APPPFPQQPQ MPMATAPFSI SDLPLLPSNI PSSMDLSSLF 180 DPSMMQSSQQ WAFQQQPQQL QQQPFGPIMG DGSGGSGGGS IGDGDLQALA RELLERQSAG 240 AMPMQPPHTH C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-36	30	134	8	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-36	30	134	8	111	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G103400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP094077	1e-118	FP094077.1 Phyllostachys edulis cDNA clone: bphylf043i04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003571705.1	1e-111	LOB domain-containing protein 30
Swissprot	O81323	2e-71	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	I1I3C6	1e-109	I1I3C6_BRADI; Uncharacterized protein
STRING	BRADI3G22510.1	1e-110	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	9e-64	LBD family protein

Link Out ? help Back to Top
Phytozome	Brast03G103400.1.p

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]