PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G114000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 360aa    MW: 39760.6 Da    PI: 5.9647
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G114000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.26.5e-23121442127
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkya..tgkrknratksgyWkat 86 
                         p+G+rF P++ e++ + L  k+++++   +l++++++++i +++P +L +++k++e+   +yfFs r+  +a  +++r+ r +k+g Wka+
  Brast03G114000.1.p  12 PRGYRFVPEELEII-RLLDDKLADRPlpYPLQNIFHDIRIRDFHPAELYEAYKEHEEdgFIYFFSIREFPTArgSKQRPARGAKNGAWKAS 101
                         89************.99********976677889**************8655554443244****9998777224678899899******* PP

                 NAM  87 gkdkevlskkgelvglkktLvfy.......kgrapkgektdWvmheyr 127
                         g  k+v +     vg k tLvfy       +++ +++ ktdW mhe++
  Brast03G114000.1.p 102 GGGKAVSD-----VGQKLTLVFYdkitttaDKSPNSSGKTDWGMHEFT 144
                         *****988.....9*********887776445566667********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-286163IPR003441NAC domain
PROSITE profilePS5100524.27811164IPR003441NAC domain
PfamPF023658.1E-1312144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEDNGRNQHG FPRGYRFVPE ELEIIRLLDD KLADRPLPYP LQNIFHDIRI RDFHPAELYE  60
AYKEHEEDGF IYFFSIREFP TARGSKQRPA RGAKNGAWKA SGGGKAVSDV GQKLTLVFYD  120
KITTTADKSP NSSGKTDWGM HEFTRIMGPG DKVADQALYR LYKMKKSKKK KMKADLCVAT  180
SSREAMSPTC PTATASSFME SQLLDGVASS SRAHDYAHEY SFGAAPGPSS SVVSMDGAGQ  240
QYTSLLPITT AQVNYQMMTP PQHAAHHFGA TSSQQHLGCP GPVVVGSWSE QQQLVNVPPP  300
PPAPALDDEF DASCERKALS PDCFPMDCDL SAMLTDPPML KEDEDSEFYN LRFDGNSWA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G114000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317174.10.0NAC domain-containing protein 22-like
TrEMBLA0A0Q3I8E20.0A0A0Q3I8E2_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-13NAC-like, activated by AP3/PI