PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G115600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 97aa MW: 10412.7 Da PI: 6.1248

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G115600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	31.5	5e-10	14	82	2	65
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrd 65 p f+F+Ptd++lv +yL ++ g + + e+++ e++ + Pw+ + ++++ ++ +fFs+ Brast03G115600.1.p 14 SPAFKFDPTDDDLVRHYLLPHSLGLSGPHEHAVIEANPGGLSPWEVLErhgidMFSGAAEQAFFFSPVP 82 689*******************99888788999********963356655555667889999765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-14	5	83	IPR003441	NAC domain
PROSITE profile	PS51005	14.969	13	96	IPR003441	NAC domain
Pfam	PF02365	1.4E-6	15	81	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MVAASYGFNQ PGLSPAFKFD PTDDDLVRHY LLPHSLGLSG PHEHAVIEAN PGGLSPWEVL 60 ERHGIDMFSG AAEQAFFFSP VPNAGRMVHM VRHSSG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G115600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010229803.1	3e-46	NAC transcription factor NAM-B1
TrEMBL	I1GXD4	2e-44	I1GXD4_BRADI; Uncharacterized protein
STRING	BRADI1G36200.1	3e-45	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18615	2	7

Link Out ? help Back to Top
Phytozome	Brast03G115600.1.p