PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G121500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 258aa    MW: 28474.8 Da    PI: 10.3923
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G121500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.24.9e-174698456
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        +++ + eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa +k
  Brast03G121500.1.p 46 KRRQSVEQVRTLEKNFEVGNKLEPERKLQLARALGLQPRQVAIWFQNRRACWK 98
                        346789********************************************999 PP
2HD-ZIP_I/II86.24.3e-2845102259
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkql 59 
                         kkrr s eqv++LE++Fe  +kLeperK +lar+Lglqprqva+WFqnrRA +k+  +
  Brast03G121500.1.p  45 KKRRQSVEQVRTLEKNFEVGNKLEPERKLQLARALGLQPRQVAIWFQNRRACWKSSSI 102
                         9*****************************************************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.3E-1543104IPR001356Homeobox domain
SuperFamilySSF466899.84E-174498IPR009057Homeodomain-like
CDDcd000861.16E-1545101No hitNo description
PROSITE profilePS5007115.07845100IPR001356Homeobox domain
PfamPF000462.1E-144698IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-175199IPR009057Homeodomain-like
PRINTSPR000318.5E-57180IPR000047Helix-turn-helix motif
PRINTSPR000318.5E-58096IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MTPPPMVVGS KRPPTPSIYP DGDLDDGTAS EDEDKEGGLV LVNPKKRRQS VEQVRTLEKN  60
FEVGNKLEPE RKLQLARALG LQPRQVAIWF QNRRACWKSS SIRTTTHCGA SSTPREPRMT  120
RSSRTTTSSR PRSWRSREEE EGAGSRRRCR SSSTSTSRRR RPPAGCSENS SEINLDISRP  180
PPPATTMHRA SGAGAVQFYA SLGRPGLDIE NLLHSHSSSP PLKMELGTAN FGNLLCGSVD  240
EPPQFWQWAA DGHNQFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145160RRRCRSSSTSTSRRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G121500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0950041e-113FP095004.1 Phyllostachys edulis cDNA clone: bphylf056d17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188842.15e-52homeobox-leucine zipper protein HOX21-like isoform X2
SwissprotQ8S7W92e-45HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A3S7QI394e-52A0A3S7QI39_FESAR; Class I homeodomain-leucine zipper protein 21
STRINGTraes_4DL_88ABAD6C0.12e-51(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.14e-27HD-ZIP family protein