PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G140400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 229aa    MW: 25163.6 Da    PI: 8.6104
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G140400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA581.3e-1893127135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++C +tkTp+WR+gp+g +tLCn+CG++yr+ +l
  Brast03G140400.1.p  93 CRHCEATKTPQWREGPNGRRTLCNPCGMRYRSGRL 127
                         *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.18E-1286137No hitNo description
SMARTSM004011.5E-1287137IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.7E-1391124IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.13491123IPR000679Zinc finger, GATA-type
CDDcd002022.62E-1592144No hitNo description
PfamPF003202.7E-1693127IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MVVVDGLQGD AVTDDLFASD GLEVTAAGVG EGEEEEELEW LVDKDAFPSV ETTTPKPSRL  60
MRRRMRHEGD GRRPSCSPPP PTTWPRAACE RKCRHCEATK TPQWREGPNG RRTLCNPCGM  120
RYRSGRLVPE YRSISSPTFS PGKSAIVGAI NVVDRDRSIH GLILISINVA TYFLQKKNQR  180
GHIAAEKAPA AFSAGKRLIM DNLITGMPIP PQDHQHKRTN LLVELGNA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G140400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315684.17e-33uncharacterized protein LOC8070522 isoform X2
RefseqXP_022685360.15e-34GATA transcription factor 5-like
TrEMBLA0A1B6QKH52e-31A0A1B6QKH5_SORBI; Uncharacterized protein
TrEMBLA0A368SJS61e-32A0A368SJS6_SETIT; Uncharacterized protein
STRINGSb01g020090.15e-32(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-24GATA transcription factor 11