PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G150700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 240aa    MW: 24747.3 Da    PI: 8.5848
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G150700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61e-056281221
                        EETTTTEEESSHHHHHHHHH CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                        +C+ Cgk+F+++  L  H+r
  Brast03G150700.1.p 62 PCTECGKRFPSWKALFGHMR 81
                        6******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.916188IPR007087Zinc finger, C2H2
SuperFamilySSF576672.05E-86183No hitNo description
SMARTSM003550.00376183IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-46283IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.0E-96385IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SuperFamilySSF576672.05E-8148175No hitNo description
PfamPF139121.4E-10153177IPR007087Zinc finger, C2H2
PROSITE profilePS501579.016153175IPR007087Zinc finger, C2H2
SMARTSM003550.84153175IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEPAQPPPPP PPPPPPGRHE MSLTLTLALP PPALTIPSKP QHLRRVARCS PATGADGTPP  60
SPCTECGKRF PSWKALFGHM RCHPDRQWRG ITPPPYLVRA APGQQCFSAQ EREVAASLLM  120
LSSVSGKGKR KTSASSASPG PSAAAAAESC DEHRCGVCDR GFASGQALGG HKRCHWERAA  180
CAAVIAAGGS GGPASMSEQA AAAVLDLNLP PPPLRGSDQP GSSLNEMLDL KLGLTTGDI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G150700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317180.11e-92zinc finger protein ZAT3-like
TrEMBLA0A2K2CZU62e-93A0A2K2CZU6_BRADI; Uncharacterized protein
STRINGBRADI3G28850.16e-92(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-18C2H2-like zinc finger protein