PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G164400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 251aa    MW: 27714.2 Da    PI: 6.046
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G164400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.3e-08341148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd l+++ ++++G g       +++  R++ +c+srw++yl
  Brast03G164400.1.p  3 KGKWSKEEDNLIKNHIEKYGIG-------RLQ--RCGRSCRSRWLNYL 41
                        79******************99.......777..************97 PP
2Myb_DNA-binding34.25.9e-114891247
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        g++T+ E+ ++ +   + G+  W+ Ia++++ gRt+  +k++w++ 
  Brast03G164400.1.p 48 GNFTEAEERIICEMYSKRGSC-WSVIAAELP-GRTDLAIKNYWNST 91
                        89*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.578141IPR017930Myb domain
SMARTSM007176.4E-6243IPR001005SANT/Myb domain
SuperFamilySSF466893.4E-22288IPR009057Homeodomain-like
PfamPF002494.5E-6341IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-13448IPR009057Homeodomain-like
PROSITE profilePS5129419.3394296IPR017930Myb domain
SMARTSM007171.0E-104694IPR001005SANT/Myb domain
PfamPF002497.6E-104891IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-214995IPR009057Homeodomain-like
CDDcd001672.05E-84992No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MKKGKWSKEE DNLIKNHIEK YGIGRLQRCG RSCRSRWLNY LRPGLKHGNF TEAEERIICE  60
MYSKRGSCWS VIAAELPGRT DLAIKNYWNS TLKKRFPRAA RSRRRTSCNS SDDTSPDLTL  120
VVYNDDESNS TTTAPDLALV VHSEEENATA GSSSGHAARV DKPVAVLAGS QVQAEAQPPP  180
ATPVKEELIS APVRTPPADF HQTDEEMDVG WALMSPMPLS FMDPDLARII GDLPPTAGFD  240
DIGSFLSFFD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-2419625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G164400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317185.11e-111myb-related protein 330
TrEMBLA0A2K2D0361e-128A0A2K2D036_BRADI; Uncharacterized protein
STRINGSi037244m1e-74(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122282638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.14e-38myb domain protein 87