PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G169300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family YABBY
Protein Properties Length: 322aa    MW: 33550.9 Da    PI: 8.9964
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G169300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY78.71.8e-2450101657
               YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqll 57 
                          seq+Cyv+C fC+t+l+vsvPs+sl+k+vtvrCGhC+sll+vn++      
  Brast03G169300.1.p  50 ESEQLCYVHCHFCDTVLVVSVPSSSLLKTVTVRCGHCSSLLTVNMRGLLFPA 101
                         69****************************************9988765433 PP
2YABBY1341.9e-41215280106170
               YABBY 106 deevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         +e +pr+ p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  Brast03G169300.1.p 215 KEPSPRTNPvVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 280
                         56678888879*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.2E-6350280IPR006780YABBY protein
SuperFamilySSF470955.37E-8218273IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.9E-4229272IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MSSSSSSGAS VAASFTPVSQ EQMAAAENLP PPPQQQQKLA LQEEAPAGPE SEQLCYVHCH  60
FCDTVLVVSV PSSSLLKTVT VRCGHCSSLL TVNMRGLLFP ATTNATAAAS AVTTLTDASS  120
TPPAAGAGGA HSGQQFHYAP SPAHSLNLAP GPGISGNHNV PPRHSLSLLD EISSANPASL  180
QLLEQRGGRM IAGAAARNAA APAPAPPAAA GKGGKEPSPR TNPVVNRPPE KRQRVPSAYN  240
RFIKDEIQRI KAGNPDISHR EAFSAAAKNW AHFPHIHFGL MPDHQGLRKT SLLPLPQDHQ  300
RKDVLLKDGL YAAANMGVAP Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G169300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3302281e-122AY330228.1 Triticum aestivum YABBY protein (YAB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574170.11e-155protein YABBY 3
SwissprotQ8L5562e-94YAB3_ORYSJ; Protein YABBY 3
TrEMBLI1I5941e-153I1I594_BRADI; Uncharacterized protein
STRINGBRADI3G30410.11e-154(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-46YABBY family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]