PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G169600.3.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 561aa    MW: 60449.9 Da    PI: 5.2887
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G169600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix110.31.2e-34245330187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k ev+aLi++r+++++r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea
  Brast03G169600.3.p 245 RWPKAEVHALIQLRSNLDTRYQEAGPKGPLWEEISAGMRRMGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 330
                         8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.41238302IPR017877Myb-like domain
SMARTSM007170.0053242304IPR001005SANT/Myb domain
CDDcd122032.58E-29244309No hitNo description
Gene3DG3DSA:1.10.10.605.0E-4244301IPR009057Homeodomain-like
PfamPF138372.0E-23244331No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MPMGVGNLSF STSNTEEFSE EEEEEEDSDD EGTDDMAVGG KRKRLSSDGG ASGGKNSKKM  60
MRFFEGLMRQ VMERQEAMQQ RFLEAIEKRE QDRMIREEAW RRQEMARLAR EQEILAQERA  120
MAASRDAAVL GFIQKITGQP VPMPMPPMAP PPSVAFMPPS SHPAPISFSA APPSSQPPSQ  180
SPRPQKPPMP LATPAPQKTP PVPATPPPPP PQQQQQQQGS GGMEMVAVAA GELQAHDGGS  240
ASSSRWPKAE VHALIQLRSN LDTRYQEAGP KGPLWEEISA GMRRMGYSRS SKRCKEKWEN  300
INKYFKKVKE SNKKRPEDSK TCPYFHQLEA LYRNKQAAAA PLPLAAPPPP PPELTVAAPI  360
SQTPPPHASQ QQQPAAKNGA GNGHGNGNGS GVAGSEGGGV SAGAVQMQAS NGFFGEAGAV  420
AGKKPEAMMK ETIVLEQQQR QQPQAAPISS SYNNRAGVDS DNSMDDEDDY DDEDEDDDDE  480
DDVDGNKMQY EIQFQSQQQQ QQQQHHQLHQ QHHQHNNHNV VRPNAGAAGG GNQPGGAAPP  540
SAASAAAATT TAGSFLGMVQ *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G169600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0252961e-121AC025296.10 Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence.
GenBankAP0149661e-121AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126181e-121CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankCT8305451e-121CT830545.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA218F06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574172.10.0trihelix transcription factor GTL1 isoform X1
RefseqXP_010234894.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLA0A2K2D0790.0A0A2K2D079_BRADI; Uncharacterized protein
STRINGBRADI3G30457.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-53Trihelix family protein