PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G184100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 238aa    MW: 25897 Da    PI: 10.654
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G184100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.63.9e-3119122199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+kv tpsdv+k++rlv+pk++ae++      +  +++++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD v+F + 
  Brast03G184100.1.p  19 FEKVVTPSDVGKLNRLVIPKQHAERCfpldldK-GNAGGIILSFEDRGGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLVAGDAVLFARG 108
                         99***************************9954.45799**************************************************86 PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         + +++++++ ++r+
  Brast03G184100.1.p 109 RGHGRRFFIDFRRR 122
                         66899899999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-4011122IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.62E-3115122IPR015300DNA-binding pseudobarrel domain
CDDcd100174.59E-2717112No hitNo description
PROSITE profilePS5086314.77619122IPR003340B3 DNA binding domain
SMARTSM010191.2E-2219123IPR003340B3 DNA binding domain
PfamPF023622.8E-2819122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MEFLPAAAPA ETTEKEHMFE KVVTPSDVGK LNRLVIPKQH AERCFPLDLD KGNAGGIILS  60
FEDRGGKAWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLVAG DAVLFARGRG HGRRFFIDFR  120
RRLRPVPASP PPLPSVPLCR AWPWEGVSFL RQQVPAAAVV LKSVVPAAAA LLEPASRPKR  180
VVRLFGVNLD CPACPPAAAT QTAASTLLLQ QKQLPSPSSS SSSSTAGKEA CSLDLGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-50141223113B3 domain-containing transcription factor NGA1
5os9_B3e-50141223113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G184100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756192.11e-94putative B3 domain-containing protein Os10g0537100
SwissprotQ8LNN82e-70Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBLI1I5Q72e-93I1I5Q7_BRADI; Uncharacterized protein
STRINGBRADI3G32140.14e-94(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.12e-46B3 family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]