PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G184500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 231aa    MW: 25597.2 Da    PI: 9.7656
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G184500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.2e-08341148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd l+++ ++++G g       +++  R++ +c+srw++yl
  Brast03G184500.1.p  3 KGKWSKEEDNLIKNHIEMYGIG-------RLQ--RCGRSCRSRWLNYL 41
                        79******************99.......777..************97 PP
2Myb_DNA-binding27.76.3e-094889245
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                        g++T  E+ ++ +   + G+  W+ Ia+ ++ gRt+  +k++w+
  Brast03G184500.1.p 48 GNFTLAEETIIWEMYSKRGSC-WSVIAAQLP-GRTDLAVKNYWN 89
                        89*****************99.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.461145IPR017930Myb domain
SMARTSM007171.6E-5243IPR001005SANT/Myb domain
SuperFamilySSF466891.21E-21288IPR009057Homeodomain-like
PfamPF002494.7E-6341IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-12448IPR009057Homeodomain-like
CDDcd001672.23E-6541No hitNo description
PROSITE profilePS5129413.0784696IPR017930Myb domain
SMARTSM007171.5E-64694IPR001005SANT/Myb domain
PfamPF002491.1E-74889IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-184995IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MKKGKWSKEE DNLIKNHIEM YGIGRLQRCG RSCRSRWLNY LRPGLKHGNF TLAEETIIWE  60
MYSKRGSCWS VIAAQLPGRT DLAVKNYWNI TLAKRVPGAR AEARRRRSRP SSSTTSDARK  120
PDEIALVAHD EESATTGSPC HATVGRARPL LAVNAAKEEV GGAARAERKP AVARAPLPEN  180
APPRRGDQAG AMDMVCAPLS PFPLAFMEPD LPWLAGFDEI DSFLPWFDGW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-2119625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G184500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756015.11e-115transcription factor MYB87
TrEMBLA0A2K2D0I41e-114A0A2K2D0I4_BRADI; Uncharacterized protein
STRINGMLOC_72262.21e-106(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122282638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.18e-34myb domain protein 87