PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G185500.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 202aa MW: 22914 Da PI: 10.1812

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G185500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.1e-32	27	80	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH+rFv+a+++LGG+ +AtPk++l+lm+v gLt++hvkSHLQ+YR Brast03G185500.1.p 27 PRLRWTPELHRRFVHAIHSLGGHRRATPKRVLQLMGVGGLTISHVKSHLQMYRN 80 8****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.746	23	83	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-30	23	81	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-16	25	80	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	27	80	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-10	28	79	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MTMESRTMAA GRERVDRVRQ YNRSKVPRLR WTPELHRRFV HAIHSLGGHR RATPKRVLQL 60 MGVGGLTISH VKSHLQMYRN MRGNDLDMMQ GIQQMDQEHT FSGGMEVWTD VQQVHHHHEY 120 CDGPYCSRHS PKHTVLLHHT QLKRPSEMES TQDAEAASPQ KSLLQGIRER DAAAGGRLLL 180 RQYSLAAAGQ QAAAAAAAGY CY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	8e-20	28	82	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-20	28	82	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-20	28	82	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-20	28	82	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G185500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003572016.3	1e-124	uncharacterized protein LOC100832345
TrEMBL	A0A2K2D0I1	1e-122	A0A2K2D0I1_BRADI; Uncharacterized protein
STRING	Traes_1BL_E2629CBC1.1	2e-91	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7610	29	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	4e-27	G2-like family protein

Link Out ? help Back to Top
Phytozome	Brast03G185500.1.p