PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G196100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 359aa    MW: 37219.5 Da    PI: 8.1026
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G196100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.67e-18259293135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Brast03G196100.1.p 259 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 293
                         *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-16253303IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.227257289IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-14257317No hitNo description
Gene3DG3DSA:3.30.50.101.8E-13257291IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.36E-14258305No hitNo description
PROSITE patternPS003440259284IPR000679Zinc finger, GATA-type
PfamPF003201.1E-15259293IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MASEWEIAMG VDQLGMGMGA YNNAPSAGAA APMGHHAGGG GYHFYGMQPM GADPSMRVDE  60
LLDLSSAGAG AHDFLPAAAA DNGHYHYHHL GPGVGEPSAA TTPSATSSDQ QTSMLSFADE  120
FYIPSEEAAE LEWLSKFVDD SYSDMPNYSS AAHAAMAKAA AASNSPAGHQ GSCVTAAAPP  180
GRGARSKRSR ASAAAAAAWH SLMPRPPSQP SPSSSSCSSS DIPASSNKPA RPNNSRGKKQ  240
GPPVADQSVG LVEGGVRRCT HCASEKTPQW RTGPLGPKTL CNACGVRFKS GRLVPEYRPA  300
ASPTFLLTQH SNSHRKVMEL RRQKEIVLIR GSHPSVAAGP AGAATVKPEL LFRDYGIC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G196100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574323.10.0GATA transcription factor 2
TrEMBLI1I6370.0I1I637_BRADI; GATA transcription factor
STRINGBRADI3G33200.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.13e-46GATA transcription factor 2