PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G197400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 354aa    MW: 38684 Da    PI: 9.9929
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G197400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.82.2e-19401721127
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknra.....tks 80 
                         lppG+ F Pt +e v   L++ ++g++l+ ++  + + ++y + P +L++     +++++ ++w+f s+++ +++++ r++r      ++ 
  Brast03G197400.1.p  40 LPPGVYFAPTRNESV-GILNRWIAGEPLHDTHGfVFHDNVYGASPDELRSryppsSIRGRVRSWWFLSETKFQSRKNPRASRRadrrvATG 129
                         79*************.67*********65544438888**********744677677788899*999987766665444433212222779 PP

                 NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                         gyW+   + k++ +    + g+kktL +y g  +k++kt W+m+e++
  Brast03G197400.1.p 130 GYWRMDQSRKQLAA----VEGVKKTLKYYVGPGKKASKTPWLMEEFT 172
                         ****9999999988....78*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-1933193IPR003441NAC domain
PROSITE profilePS5100523.86440193IPR003441NAC domain
PfamPF023651.0E-1241172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAIRKGKTKK PSSSDVSSSS SAVRAMAAMP PPAAANPIQL PPGVYFAPTR NESVGILNRW  60
IAGEPLHDTH GFVFHDNVYG ASPDELRSRY PPSSIRGRVR SWWFLSETKF QSRKNPRASR  120
RADRRVATGG YWRMDQSRKQ LAAVEGVKKT LKYYVGPGKK ASKTPWLMEE FTSALDDGAG  180
KSGEPALYRL YLTPNATDDQ LREIFGEDGV RFGPDGQKKP ARALVPPHWF DAIAALLPPG  240
RVRRPLAQQR LLNYRGLRLG AAPPGNVVGQ YDQVWEAPPP PPPPLVSPGL ETIPVSGLGQ  300
YGEQHDQLFS RTAPPPPPPP PASPGPCAEM PVDDLSMPLD EFLQWVNETM ADG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G197400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236658.30.0NAC domain containing protein 52
TrEMBLA0A2K2D0U11e-180A0A2K2D0U1_BRADI; Uncharacterized protein
STRINGBRADI3G33320.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135701724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.16e-15NAC domain containing protein 64