PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G197500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 262aa    MW: 29227.4 Da    PI: 4.4266
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G197500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.71.9e-2291481128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratk.sgyWkatgkd 89 
                         l pGf+F+P dee+v ++L +++ g+kl+le ++ e d +++ Pw+L  + +++++e +fF+  +  +  +++r++r+ +  g W+ +g++
  Brast03G197500.1.p   9 LSPGFKFNPDDEEIVEYFLLRRLLGQKLPLEGMFLEDDPLRAPPWKLL-RDHGRTDEAFFFAAGHAINGgSSRRQKRTCEcGGCWEGQGQK 98 
                         579***************************99999************7.44456679999999888776246677785445999**99997 PP

                 NAM  90 kevlskkgel.............vglkktLvfykgrapkgektdWvmheyrl 128
                          +    +++l              + k +L f+ +++++g +t Wvmhey +
  Brast03G197500.1.p  99 GRKDGDTNNLrfvdpesggameiEWKKYVLNFH-NDDEEG-STGWVMHEYVV 148
                         665554222245555555666646777789999.455554.9********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-253153IPR003441NAC domain
PROSITE profilePS5100523.999168IPR003441NAC domain
PfamPF023651.0E-1711147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEAADVLGLS PGFKFNPDDE EIVEYFLLRR LLGQKLPLEG MFLEDDPLRA PPWKLLRDHG  60
RTDEAFFFAA GHAINGGSSR RQKRTCECGG CWEGQGQKGR KDGDTNNLRF VDPESGGAME  120
IEWKKYVLNF HNDDEEGSTG WVMHEYVVTA PAGLVSPTSI RAYRIRLSEH GKKRKREAED  180
PCGGDEEAAR AAARQARAEE PDLAVQEHIS GASQFGFPDQ DCEVVTDGDD QPLQVDSFEF  240
EGLYVPDNSS WFEPMPDLMK L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G197500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317200.11e-136NAC domain-containing protein 83-like
TrEMBLA0A2K2D0W21e-109A0A2K2D0W2_BRADI; Uncharacterized protein
STRINGBRADI3G33680.11e-135(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.11e-07NAC domain containing protein 52