PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G198000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 259aa    MW: 27356.3 Da    PI: 4.4413
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G198000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.3e-1878127255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr +  +g+Wv+eIr+p++   + r++lg+f ta++Aa+a++aa+++++g
  Brast03G198000.1.p  78 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTADMAARAHDAAALAIKG 127
                         69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575126No hitNo description
SMARTSM003809.2E-3378142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-3078137IPR001471AP2/ERF domain
PfamPF008472.2E-1278127IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-1978137IPR016177DNA-binding domain
PROSITE profilePS5103222.65578136IPR001471AP2/ERF domain
PRINTSPR003673.2E-107990IPR001471AP2/ERF domain
CDDcd000182.39E-1679138No hitNo description
PRINTSPR003673.2E-10101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAPRELQEAS SSSSSTSYTT SSTASCASTV TDSSSSPSSP AANATAPTAG KKQLEAEMGT  60
EEARKKKRKR SSEGKHPTYR GVRMRAWGKW VSEIREPRKK SRIWLGTFPT ADMAARAHDA  120
AALAIKGPAR AALNFPDLAE LLPRAASPAP KDVQAAAALA AAFIASPSPS EEEEEVVVGE  180
EEDAPAPPNN EGAAAAPESA AATPLRGDEE ELQLFDLPDL LLDIRDGFGF SSAMWAPLPD  240
DDEAVNAELR LEEPLLWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-16761361272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16369RKKKRKR
26570KKRKRS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G198000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0798741e-115AC079874.21 Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence, complete sequence.
GenBankAP0149661e-115AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614793.12e-68ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ71e-49ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLI1I6538e-81I1I653_BRADI; Uncharacterized protein
STRINGBRADI3G33355.11e-81(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.12e-25ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]