PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G207400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 190aa    MW: 20853.7 Da    PI: 9.7115
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G207400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.81.1e-105580126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        ykt+lC  f   G+C yGdrC+FaHg
  Brast03G207400.1.p 55 YKTKLCEKFKTDGHCMYGDRCTFAHG 80
                        9************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.4E-174887IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-105385IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.5355482IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-55481IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-85580IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MERENHPLDM TPEHVLGQSG GRPLRLPPPS QQPSEGVMPA GSQERLGQPP TKIYYKTKLC  60
EKFKTDGHCM YGDRCTFAHG SAELRRPSLA AHSAFELGGS MCYNLKNKGT FPRGFAQGPT  120
IRNPGEMRSE IPPARAAPGR AFPPVPSPLM RDLPRKMPEE QEGGAKVSNL ERLSRKKTSG  180
IYGDWPEQS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G207400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317904.12e-87zinc finger CCCH domain-containing protein 1-like
TrEMBLA0A0Q3HWU34e-86A0A0Q3HWU3_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-10C3H family protein