PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G212500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 347aa    MW: 37896.1 Da    PI: 7.0899
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G212500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.8e-31178236259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY+++Hnh+
  Brast03G212500.1.p 178 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSDHNHP 236
                         699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-32169238IPR003657WRKY domain
PROSITE profilePS5081133.109172238IPR003657WRKY domain
SuperFamilySSF1182901.27E-26174238IPR003657WRKY domain
SMARTSM007749.4E-38177237IPR003657WRKY domain
PfamPF031066.2E-26179236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MADMMADLFW LSPGEQGDLS DVVRASLHPQ PDQPNLYQQL PAAAASFSCL QQPEELEGGL  60
LLHGDHQQLG MITDDANCKR PSSDHKQVIS PDYSLAEMIH RMSPHRPPGI ERQHEAAGDD  120
VVAERGDRMR QHMSMVHHPA RAPAASKPRK SQTKRVVCIP APTAASGRQS TSGEVVPSDL  180
WAWRKYGQKP IKGSPYPRGY YRCSSSKGCP ARKQVERSRT DPNMLVITYT SDHNHPWPTQ  240
RNALAGSTRL SSSSASAIAA TKNTSSSSSS LPTAAQGPTR NSDSISNNGS AIGAAHHQLK  300
QEDDLDLFAD MDSLNIFSSV TKTHEEDSKH QQQLFDPFSS CFFDCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-25150239280Disease resistance protein RRS1
5w3x_D9e-25150239280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G212500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572136.10.0probable WRKY transcription factor 29 isoform X1
TrEMBLI1I6K10.0I1I6K1_BRADI; Uncharacterized protein
STRINGBRADI3G34567.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.14e-53WRKY DNA-binding protein 35