PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G227900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 306aa    MW: 33851.2 Da    PI: 4.5438
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G227900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.4e-1976130357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         k++++t+eq++ Le+ F +++++  e+++eLA++lg+  rqV vWFqNrRa++k+
  Brast03G227900.1.p  76 KKRRLTAEQVQMLERSFGEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKN 130
                         5678*************************************************95 PP
2HD-ZIP_I/II130.18.7e-4275166192
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrl++eqv++LE+sF ee+kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE+d+++Lk+aydal+++++ L +++++Lr+++
  Brast03G227900.1.p  75 EKKRRLTAEQVQMLERSFGEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKNKQLEQDFDRLKAAYDALAADHHGLLSDNDRLRAQV 165
                         69**************************************************************************************998 PP

         HD-ZIP_I/II  92 k 92 
                          
  Brast03G227900.1.p 166 I 166
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-1870133IPR009057Homeodomain-like
PROSITE profilePS5007118.20471131IPR001356Homeobox domain
SMARTSM003891.4E-1874135IPR001356Homeobox domain
CDDcd000867.01E-1876132No hitNo description
PfamPF000461.0E-1676130IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.2E-2177138IPR009057Homeodomain-like
PRINTSPR000315.2E-6102111IPR000047Helix-turn-helix motif
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PRINTSPR000315.2E-6111127IPR000047Helix-turn-helix motif
PfamPF021832.0E-15131173IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDPGRVVFDS GLARMAAPGG GRAQMLLFGG ANNTGGFFRG VPGMDDERVV SNKRPFFTTH  60
EELLEEEYYD EQAQEKKRRL TAEQVQMLER SFGEENKLEP ERKTELARRL GMAPRQVAVW  120
FQNRRARWKN KQLEQDFDRL KAAYDALAAD HHGLLSDNDR LRAQVISLTD KLQGNETLPS  180
ATATTAQEVD QPNDHTVEAT EVVLAQQRKE EILSSGTNDS SSPVVINIAE GTNHSSESGY  240
VAGDYGYTRQ YGGGALSSEE EDGGAVSDEG CSFHLPDAML GAGLVHHVTE EEVQLGNWTS  300
WFWNE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123131RRARWKNKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G227900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1014841e-144FP101484.1 Phyllostachys edulis cDNA clone: bphyem203i06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235125.10.0homeobox-leucine zipper protein HOX5
SwissprotQ6ZA741e-119HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5
TrEMBLI1I7170.0I1I717_BRADI; Uncharacterized protein
STRINGBRADI3G35850.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.18e-50homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]