PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G232100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 403aa    MW: 42105.8 Da    PI: 8.0757
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G232100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.2e-32198251255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Brast03G232100.1.p 198 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 251
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-15195252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28196252IPR009057Homeodomain-like
TIGRFAMsTIGR015579.2E-24198251IPR006447Myb domain, plants
PfamPF002495.7E-7199250IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MEAAAPSPDL SLHISLPTSG TTMPTSAPGL GAAAAASGAG DPWRRLNGST ASTELSLSPP  60
QGQQGDVLPW RLRQMMASSV PVTLPTRPLD AAAEPSARPI RGIPVYSSRP GAAHHPFYNN  120
SSPYHQPSST VAAPWPSSSA ESAAAAFLSP SAYHRMLSST GRLQGVLADT LRGYGALGAA  180
SRFMLPRLPG SRRSMRAPRM RWTSSLHARF VHAVELLGGH ERATPKSVLE LMDVKDLTLA  240
HVKSHLQMYR TVKSTDKPAS SSGPMDGIGS GSGDDDLPDS ARQATSGGDM NPQLFNEHNR  300
SSSERTASPA AVDVAAGGDV DCSSSAANSD SRARSNSRDL WPSSNGCDPA AHRLVGASRA  360
AEGIEPACRS SSLQLQVSSH ELSCPSLEFT LGRPNWHGAD HD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-16199253357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16199253357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16199253357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16199253357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G232100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2865282e-78DQ286528.1 Zea mays KANADI1-like protein (kan1b) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572210.10.0probable transcription factor RL9
SwissprotQ0J2353e-95ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLA0A0Q3ID310.0A0A0Q3ID31_BRADI; Uncharacterized protein
STRINGBRADI3G36260.11e-171(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25583787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.14e-49G2-like family protein