PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G236100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 227aa    MW: 24692.6 Da    PI: 4.5634
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G236100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.83.4e-3356144366
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................s 66 
                          ++drhski T++g RdRR+Rls+ +a+ fF+Lqd LGfdk+s+t++WLl+q+kpai+ l  +                         +
  Brast03G236100.1.p  56 FRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDLLGFDKASNTVDWLLTQSKPAIDRLSLSdstllpvpgapvpaaaaaitgkekgE 144
                         689*********************************************************99988888777664432222222222110 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-3157138IPR005333Transcription factor, TCP
PROSITE profilePS5136933.69957115IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MPSLDEHEQS FPAEMYHQQQ QHQETLEAVL RQQVTAAPMA VIPEPGINGA GRKRPFRTDR  60
HSKIRTAQGV RDRRMRLSVG VARDFFALQD LLGFDKASNT VDWLLTQSKP AIDRLSLSDS  120
TLLPVPGAPV PAAAAAITGK EKGEAAAAAA AAATASSSTS TGCFRDERAT EMIDSIGDVS  180
GDGGELDWFA AEAPAMEQPM MEGLDYYYQY YQMEEMMRAA TTQDQY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G236100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050933e-64AP005093.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1294_G06.
GenBankAP0149653e-64AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126173e-64CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBankEU7024073e-64EU702407.1 Oryza sativa Japonica Group putative TCP transcription factor (DP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756189.11e-101transcription factor TB1
TrEMBLA0A0Q3Q9P01e-101A0A0Q3Q9P0_BRADI; Uncharacterized protein
STRINGBRADI3G36590.11e-100(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.26e-26TCP family protein