PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G236300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Nin-like
Protein Properties Length: 351aa    MW: 38357.7 Da    PI: 4.867
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G236300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK79.24.5e-25190239352
              RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                         +++ le+l+kyF +p+++AA+eL+v++T+LK++CRq+G++RWPhRk+ksl
  Brast03G236300.1.p 190 QHVGLEELRKYFLMPMREAAQELEVGTTALKKRCRQLGVARWPHRKMKSL 239
                         67899*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.985171260IPR003035RWP-RK domain
PfamPF020422.1E-21192239IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MQYVVNGDVW YDHQQLAAFP FCSPPPQPGL AELADCCSSD LILSLISSCE EEEEETARSA  60
AYLLPPPPVF PAADDVPPLP PTAGVIDDDD VLLLELEPFL EALGNELVVN GAPPIVPVAL  120
DHPIEKTTTT QPLQINGRHD DDALSVVVFT GYDETAAAEK QQRCAFARPP AVEKKKKRGD  180
GPAAGGRSLQ HVGLEELRKY FLMPMREAAQ ELEVGTTALK KRCRQLGVAR WPHRKMKSLR  240
SLISNLQEMG AGMMKGAGNG NGTSSSPALG AVQVAELELC RAMMEENPAM ELTESAKKLR  300
QACFKENYKR RRLDDAAATT TVNNMLEYGQ CCSYYPPFSF SHHQLPQHLE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308312KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G236300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314653.11e-123protein RKD4-like
TrEMBLI1HVI21e-146I1HVI2_BRADI; Uncharacterized protein
STRINGBRADI2G61760.11e-147(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128882330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.11e-30RWP-RK domain-containing protein