PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G238600.3.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 244aa    MW: 26569.4 Da    PI: 4.9193
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G238600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.8e-162576155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s+y+GV +++ +g+W+A+I  ++    +k+ +lg++ t eeAa a++ a+ + +g
  Brast03G238600.3.p 25 SKYRGVARHHHNGKWEARIGRVYG---NKYLYLGTYATQEEAAMAYDIAAIEHRG 76
                        89****99***********99654...4**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.8E-112575IPR001471AP2/ERF domain
CDDcd000187.33E-252586No hitNo description
SuperFamilySSF541717.19E-182586IPR016177DNA-binding domain
PROSITE profilePS5103217.782684IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-182685IPR001471AP2/ERF domain
SMARTSM003801.3E-262690IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEGQSREEYI GSLRRKSTGF SRGVSKYRGV ARHHHNGKWE ARIGRVYGNK YLYLGTYATQ  60
EEAAMAYDIA AIEHRGLNAV TNFDVSRYIN WHRRLCHSDQ QLLLGDSITP ATNPTIDLEE  120
AMASDNQDQF LLPSQVTTPP STSSALGMLL QSPRLKEVIE GSGAASAMAA SSETSWSWSS  180
CSPSPSPPSP SPPAPQQRCS FPDDVQTYFG CEGGDGGAEV DTFLFGDLSA YAAPMFQFEQ  240
LDV*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G238600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067699e-86AK106769.1 Oryza sativa Japonica Group cDNA clone:002-115-F07, full insert sequence.
GenBankHQ8588209e-86HQ858820.1 Oryza sativa Japonica Group isolate UT1237 AP2-EREBP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572236.11e-110AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN42e-54AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0Q3FJV11e-110A0A0Q3FJV1_BRADI; Uncharacterized protein
STRINGBRADI3G36820.11e-109(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.28e-54ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]