PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G239100.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 196aa    MW: 22386.3 Da    PI: 9.2534
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G239100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045159179222
                         EETTTTEEESSHHHHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                         kC +C+ s+s+ks+L++H+r 
  Brast03G239100.2.p 159 KCIICNASCSSKSDLESHLRG 179
                         6779***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.81E-96299No hitNo description
SMARTSM004511.7E-46498IPR003604Zinc finger, U1-type
PfamPF128742.4E-76791No hitNo description
SMARTSM003550.156791IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806991IPR007087Zinc finger, C2H2
PfamPF128740.0027128144No hitNo description
SuperFamilySSF576678.51E-9148191No hitNo description
SMARTSM004510.12155189IPR003604Zinc finger, U1-type
PfamPF128745.1E-8158182No hitNo description
SMARTSM003550.0084158182IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280160182IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MFVIPMANSV TSASMPRRSV KDRTEEWYQP PWHRRAEEED VSIDVAGLHT KTLSGVKRKR  60
TAETLLWVCS ICNITCHRET DVQSHLRGRR HQAKIENQQR EGRDIEAKLH EKKAPQLADK  120
NQKPASRWKC GICNANCTSE SDLETPHLDK NQKPASIWKC IICNASCSSK SDLESHLRGR  180
RHHWNIQAQR LEGSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G239100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235166.11e-118zinc finger homeobox protein 2
TrEMBLA0A2K2D1P11e-117A0A2K2D1P1_BRADI; Uncharacterized protein
TrEMBLI1I7E21e-117I1I7E2_BRADI; Uncharacterized protein
STRINGBRADI3G36867.11e-117(Brachypodium distachyon)