PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G240900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 364aa    MW: 37360.5 Da    PI: 6.9908
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G240900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.31.6e-324194557
         ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57
                         Y+eClkNhAaslGghavDGCgEfmps+ +  +++ +lkCaACgCHRnFHRr  
  Brast03G240900.1.p 41 LYRECLKNHAASLGGHAVDGCGEFMPSPAAVpSNPGSLKCAACGCHRNFHRRLL 94
                        6**************************99999*******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.8E-274192IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.8914293IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-294292IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-214292IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.8E-28214284IPR009057Homeodomain-like
SuperFamilySSF466895.97E-16216283IPR009057Homeodomain-like
TIGRFAMsTIGR015652.3E-21225281IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEAVMDVKYR PVVFSNGGGA VAAKKMRPAA AAAVVGDDSG LYRECLKNHA ASLGGHAVDG  60
CGEFMPSPAA VPSNPGSLKC AACGCHRNFH RRLLEAPPSP PPLLALPPPP PPPHFVHGAG  120
AQHPQRGEEM PERRMPAAAA GDDDYSDDSE ERSDYEDEED DDDPPLPPAA APAGYISATH  180
MLLSLSTSGA PSAPAAIASR PPGGPAGAGA GAQAPQPGGG SSSSRKRFRT KFSPEQKQQM  240
QALSERLGWR LQKSDEAVVH ERCREIGVGK GVFKVWMHNN KHNFVGGHSA RRSASLYSSG  300
TPQQQPSAYP APPPPAPASA PPVHADFNIN GSAPAPAAAA AEGDGFQRPT ATASGGSGSP  360
QSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A8e-202252831775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G240900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047026e-85AP004702.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0524F03.
GenBankAP0051596e-85AP005159.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016C11.
GenBankAP0149646e-85AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126166e-85CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572241.11e-147zinc-finger homeodomain protein 9
SwissprotQ6Z5283e-76ZHD10_ORYSJ; Zinc-finger homeodomain protein 10
TrEMBLI1I7G01e-146I1I7G0_BRADI; Uncharacterized protein
STRINGBRADI3G37040.11e-147(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.13e-25zinc finger homeodomain 1