PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G241100.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

ZF-HD

Protein Properties

Length: 125aa MW: 13033.6 Da PI: 7.9174

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G241100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	89.2	4e-28	24	77	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +vrY eC++Nh a++Gg+avDGC+Efm++ geegt+ al+CaACgCHR+FH r Brast03G241100.1.p 24 GVRYGECRRNHVARTGGYAVDGCREFMAE-GEEGTSGALRCAACGCHRSFHHRVL 77 68************************8.999****************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-16	23	75	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.1E-27	25	76	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.7E-21	26	75	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.079	27	76	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MKRFVILRRC HPPPPPAATA FGGGVRYGEC RRNHVARTGG YAVDGCREFM AEGEEGTSGA 60 LRCAACGCHR SFHHRVLVPA RCCCRHLHAD ADADADADAG AGASGLSWDV CSTESTASST 120 AATR*

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G241100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010236710.1	8e-53	mini zinc finger protein 4
Swissprot	Q0J5F8	1e-31	MIF4_ORYSJ; Mini zinc finger protein 4
TrEMBL	A0A2K2D1P8	2e-51	A0A2K2D1P8_BRADI; Uncharacterized protein
STRING	MLOC_45078.4	2e-31	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74660.1	5e-23	mini zinc finger 1

Link Out ? help Back to Top
Phytozome	Brast03G241100.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]