PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G246700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 217aa    MW: 22866.4 Da    PI: 4.5156
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G246700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.3e-172069255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +ykGVr +k +grWv+eIr p++   r r++lg++ +ae+Aa a +aa+ +l+g
  Brast03G246700.1.p 20 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAALAFDAAAVCLRG 69
                        7******99.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.03E-172079No hitNo description
PfamPF008474.4E-102069IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-182078IPR016177DNA-binding domain
SMARTSM003801.2E-302084IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-272079IPR001471AP2/ERF domain
PROSITE profilePS5103221.3382078IPR001471AP2/ERF domain
PRINTSPR003673.3E-82132IPR001471AP2/ERF domain
PRINTSPR003673.3E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDGAGGSRGE GSGAPPAERR YKGVRLRKWG RWVSEIRMPN SRERIWLGSY ESAEKAALAF  60
DAAAVCLRGS RAGSLNFPEC PPDVRYVPGA LPTPERIQAV AASHANSACP APAATLAAAG  120
APPQEAPASA RTSTGMDAAG RDDMLDYWSF MDELPSSMPP LTSSAPGTNA GIVPAMDDFM  180
YGFSPPPRPA EEAAEDVIDD HGDDDGHTFL SDLWKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-131978463ATERF1
3gcc_A8e-131978463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G246700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236718.11e-102ethylene-responsive transcription factor ERF017
TrEMBLI1I7M01e-101I1I7M0_BRADI; Uncharacterized protein
STRINGBRADI3G37544.11e-101(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-20ERF family protein