PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G248800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Nin-like
Protein Properties Length: 136aa    MW: 15515.8 Da    PI: 5.6291
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G248800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK38.62.1e-1259102750
              RWP-RK   7 ledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 
                         l+++ +y +lp+ +AAkeL++ + +LK   R++GIk WP  k+k
  Brast03G248800.1.p  59 LDEILRYLHLPMVEAAKELKMTPKALKHLSRRHGIKPWPTQKVK 102
                         678999************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151911.79739124IPR003035RWP-RK domain
PfamPF020424.6E-1159102IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MEYFQATILE SSLVNASDDG LVVVSIPVAP PTTWNENPRP DMQHDKGTIA DQHEREDMLD  60
EILRYLHLPM VEAAKELKMT PKALKHLSRR HGIKPWPTQK VKDTNKKITK LFEVMDPEKN  120
KEEVDEKIAM QSAEI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G248800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1I7N71e-62I1I7N7_BRADI; Uncharacterized protein
STRINGBRADI3G37700.12e-63(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5019822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.16e-10NIN like protein 7