PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G254700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 251aa    MW: 27195.8 Da    PI: 8.839
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G254700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.82e-08169209954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Brast03G254700.1.p 169 ARVRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 209
                         699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.18160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-13165220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-14165219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-5170209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-6183214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDFDMLNCNP EAQLELMNAM LQLEHLTALP DTHHAMPPVP PTPPSPPCTP AAPPRHFSSA  60
PPAHLIQPAV LPITGPNNCH GGAAFHDPPY YSSPQLPAAY NNGRYTAHHH QQQQSPNNPV  120
GGEAVGPGAM REMIFRIAAL QPVNIDPDTV RPPKRRNVRI STDPQSVAAR VRRERISERI  180
RILQRLVPGG TKMDTASMLD EAIHYVKFLK TQVQSLERAA AANNNSGNGQ QRPSPASSGA  240
PYQQGLNGPW *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155RPPKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G254700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046931e-115AP004693.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0461F06.
GenBankAP0149641e-115AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-115CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572294.11e-100transcription factor HEC2
TrEMBLI1I7V32e-98I1I7V3_BRADI; Uncharacterized protein
STRINGBRADI3G38250.13e-99(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.15e-38bHLH family protein