PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G256100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 244aa    MW: 26015.9 Da    PI: 6.9525
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G256100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-132369354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        r+h+e+Er+RR+riN  +++Lr+l+P+a      +++Ka+ L ++v+++++L
  Brast03G256100.1.p 23 RSHSEAERKRRQRINGHLATLRTLVPSA-----SRMDKAALLGEVVRHVREL 69
                        58*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.8532069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-112369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.71E-122370No hitNo description
SuperFamilySSF474591.83E-132375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-142372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-122675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MATDGECSAR PASSSRKTGP AVRSHSEAER KRRQRINGHL ATLRTLVPSA SRMDKAALLG  60
EVVRHVRELR GKASDATAGA DVAFPGEGDE AGVEEEEEEE EEEEEEGHGH QRRRHGGRVV  120
RAWVCCADRP GLMSDLGRAV RSASAGARPV RAEIATVGGR TRGVLELDYC RDDAHGIGNA  180
AASVDRAVAL SALRAALRTV LLNRDELLLA AAAGEEGHKR PRRLSPQTPP SWSSADLQSS  240
DLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12833ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G256100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279687e-59KJ727968.1 Zea mays clone pUT6081 bHLH transcription factor (bHLH169) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572297.11e-109transcription factor AIG1
TrEMBLI1I7W81e-108I1I7W8_BRADI; Uncharacterized protein
STRINGBRADI3G38360.11e-109(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.13e-15bHLH family protein