PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G258700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 258aa    MW: 27877 Da    PI: 4.4039
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G258700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-1948101356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k+++++ eq+++Le  Fek++++  e++++LA+ lgL+ rqV vWFqNrRa++k
  Brast03G258700.1.p  48 KKRRLSVEQVRALEGSFEKDNKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 101
                         456899***********************************************9 PP
2HD-ZIP_I/II130.28.2e-4247139193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrls eqv++LE sFe+++kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+d++aL++++dal++++++L++++++L +e+
  Brast03G258700.1.p  47 EKKRRLSVEQVRALEGSFEKDNKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDHAALRQSFDALRADHDALRRDKDALLAEV 137
                         69**************************************************************************************999 PP

         HD-ZIP_I/II  92 ke 93 
                         k+
  Brast03G258700.1.p 138 KA 139
                         86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.63E-1939105IPR009057Homeodomain-like
PROSITE profilePS5007117.24843103IPR001356Homeobox domain
SMARTSM003894.0E-1946107IPR001356Homeobox domain
PfamPF000468.1E-1748101IPR001356Homeobox domain
CDDcd000862.28E-1948104No hitNo description
Gene3DG3DSA:1.10.10.606.0E-2050109IPR009057Homeodomain-like
PRINTSPR000318.4E-67483IPR000047Helix-turn-helix motif
PROSITE patternPS00027078101IPR017970Homeobox, conserved site
PRINTSPR000318.4E-68399IPR000047Helix-turn-helix motif
PfamPF021836.5E-15103144IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MRRLVASRAG GPPVFPMAPT DDGFAGVGME EDDADEDMAV CGGGAGEKKR RLSVEQVRAL  60
EGSFEKDNKL EPERKARLAR DLGLQPRQVA VWFQNRRARW KTKQLERDHA ALRQSFDALR  120
ADHDALRRDK DALLAEVKAL KAKLLGDDDE DGAAVASFSS VKEETAAAQG SSESDSSEVL  180
NDAAVPPPPD DKATPTPAKA VVPEMGLYAV HGQQLLLKVE DDEAAFLGDD DAACGGFFVD  240
EQPPSLPWWT EPTDPWA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17278ERKARLA
295103RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G258700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682441e-118AK068244.1 Oryza sativa Japonica Group cDNA clone:J013140I04, full insert sequence.
GenBankAK1068181e-118AK106818.1 Oryza sativa Japonica Group cDNA clone:002-116-D05, full insert sequence.
GenBankCT8294461e-118CT829446.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA031N19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572308.11e-129homeobox-leucine zipper protein HOX20
SwissprotA2YWC09e-96HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
SwissprotQ6Z2489e-96HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBLI1I8011e-128I1I801_BRADI; Uncharacterized protein
STRINGBRADI3G38600.11e-128(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.17e-43homeobox protein 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]