PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G259600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Trihelix

Protein Properties

Length: 328aa MW: 36412.9 Da PI: 5.5661

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G259600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.1	5.6e-19	28	114	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 W++ e+++L++++++++++lrrg+lk+++We+v++ g +++ +qC++k+e+l+kry++++++ s +p+f++ Brast03G259600.1.p 28 WSHTETMHLLDVYEDRWNKLRRGQLKAQQWEDVAAETtarcgginGGPGQRKTGTQCRHKLEKLRKRYRAEAARPVA------SLWPFFRR 112 ***********************************999999876677788***************999886......58**** PP trihelix 85 le 86 ++ Brast03G259600.1.p 113 MD 114 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-18	26	116	No hit	No description
SMART	SM00595	1.0E-6	35	121	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MDSDDPRRAP APAGGGATTK KSGPGQPWSH TETMHLLDVY EDRWNKLRRG QLKAQQWEDV 60 AAETTARCGG INGGPGQRKT GTQCRHKLEK LRKRYRAEAA RPVASLWPFF RRMDQLERGP 120 RAALSPPAAA ASDDDDERDE EEDEEGEEEE EDEEGGQQVG EPELVPRNSN HTRSINGILR 180 DGGGGFRGFT SRPPQPQQPQ QQQQPPPPGL TLSNAPPRKR VAYEAFQAQA AADRVKAEEA 240 QADRSGAVAD GPFSDVLRDF SEGLMRLERR RMEVQWEIER GWKEVEARHG RMLQDAQRRI 300 QNTIVAASAS GKKARRDHGS SADDEDL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G259600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003574665.1	1e-152	trihelix transcription factor ASIL1
TrEMBL	A0A2K2D215	1e-151	A0A2K2D215_BRADI; Uncharacterized protein (Fragment)
STRING	BRADI3G38680.1	1e-152	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10078	29	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-21	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Brast03G259600.1.p