PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G263200.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 261aa MW: 26754.7 Da PI: 5.866

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G263200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.3	2.5e-36	53	110	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lr vPvGgg+rk+ +s Brast03G263200.1.p 53 EGEACPRCESRDTKFCYYNNYNTSQPRHFCKGCRRYWTKGGTLRCVPVGGGTRKRASS 110 5679**************************************************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-23	53	106	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-30	55	108	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.652	55	109	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	57	93	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MQEHAAAEPG RRPAQQQFAG VDLRRPKGYV AAAAAAPAKT PAAAPAAAAA AAEGEACPRC 60 ESRDTKFCYY NNYNTSQPRH FCKGCRRYWT KGGTLRCVPV GGGTRKRASS TASSAASAIK 120 RQKPSKKRRV APPEPAAAAA SSADDVPAPD ADAGAKTTAE TTTTTPPTEA ASEITTELVV 180 PAAAAEEDSF TDLLQQQGGD DAVALDLGFS DYASAVGKAA GLGMGDPYSF EWPPAFDLGA 240 CWSGAGFADP DPTGVFLNLP *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G263200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014755598.2	1e-111	dof zinc finger protein MNB1A, partial
Swissprot	P38564	1e-69	MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBL	I1I847	1e-110	I1I847_BRADI; Uncharacterized protein
STRING	BRADI3G38980.1	1e-111	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-28	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Brast03G263200.1.p

Publications ? help Back to Top
Yanagisawa S,Izui K Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif. J. Biol. Chem., 1993. 268(21): p. 16028-36 [PMID:8340424]