PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G279900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 1090aa    MW: 121319 Da    PI: 6.6517
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G279900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.91.5e-21134235199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ F + ++L +gD+v+F +d
  Brast03G279900.1.p 134 FCKTLTASDTSTHGGFSVPRRAAERIfprldfSLQPPA-QELQARDLHDNTWTFRHIFRGQPKRHLLTTGWSLFISGKRLLAGDSVLFIRD 223
                         99*****************************9777665.49************************************************65 PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         g  + +l+++++r+
  Brast03G279900.1.p 224 G--KHQLLLGIRRA 235
                         5..66679999987 PP
2Auxin_resp117.61.1e-38260343183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+ S+Wrs++
  Brast03G279900.1.p 260 AAHAAANNSQFTIFYNPRASPSEFVIPFAKYQKAVYsNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKSSQWRSIQ 343
                         79*********************************989*******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-41123263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-38126249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.87E-18133234No hitNo description
PfamPF023621.1E-19134235IPR003340B3 DNA binding domain
SMARTSM010199.3E-21134236IPR003340B3 DNA binding domain
PROSITE profilePS5086311.716134236IPR003340B3 DNA binding domain
PfamPF065071.1E-33260343IPR010525Auxin response factor
PfamPF023094.1E-99691061IPR033389AUX/IAA domain
PROSITE profilePS5174527.1119761060IPR000270PB1 domain
SuperFamilySSF542772.65E-79881055No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1090 aa     Download sequence    Send to blast
MMSAPESSCG GEEAEEGMTR RSKVNQELWY ACAGPLVALP PAGSLVVYFP QGHSEQVAAS  60
MRKDADAQIP SYPNLPSKLI CILHNVTMEA DPDTDEVYAR MTLQPVSNVT QCDKEILLAS  120
EIALKQSRPQ TEFFCKTLTA SDTSTHGGFS VPRRAAERIF PRLDFSLQPP AQELQARDLH  180
DNTWTFRHIF RGQPKRHLLT TGWSLFISGK RLLAGDSVLF IRDGKHQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGVLAAA AHAAANNSQF TIFYNPRASP SEFVIPFAKY QKAVYSNQLS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKSSQWR SIQVAWDEAA PTERRTRVSL  360
WEIEPVIAPF FIYPSPLFTA KRARQPGMID DETSEMDSLF KRTMPWLGED ICKKDLNSQN  420
SIAPGLNLVQ SLQWMNMQQN LSLAGTVMQP ELLNSLTSKH VQNLSAADIS RQISFQPQFL  480
QQNNIQFNTS LLPQQNQQTE QLAKVLAPNQ LGNIMVSQKV DQDRNSDQKQ HVVTQSSPGG  540
QASINITQPQ LVAQAQFQQP QVILQAQLQQ QQPLVQSHTV LHGGLQQIQL LQQQQPHLQK  600
QQQSRHHQQV QHSIQEQQHI KIHPVSSDAN MNMQLSDNQM KLQLLKALQS QQHLTLEQQK  660
MFFDLQQQMV NCQSDPQQCT QGATQTVGVH NTIQYTTQQN SRPHQPVQDS PGNSIPIAKT  720
DIITSMGPSS LSTAGGMQSL KTHNVPSSST SPCTNTNPVL LQSIPSSSKN QSSLTAAKTS  780
QSSVVLGPTI DQEMKPYQSV KPTVIIPKMT EQRPTTGQDC LNNNPQIDYL DTSSSATSVC  840
LSQADGSFQQ NFPPSSLNQH QLLRDTVPDN DFEVTDPRNN LLFGVNIDGQ LGLPLNADAL  900
LANSIENDKF MDQMAGNGIS NYMSSKESQQ EISSSMISHS FGVADMAFNS IDSAINDTPF  960
LNRNSRVPAP AHQRMRTYTK VHKRGAVGRS IDINRYSGYD ELKHDIARMF GIEGQLGDQS  1020
RVGWKLVYED HEKDVLLVGD DPWEDFLNCV RCIRILSPQE EMQMRLVGDI GDGFLPNQAC  1080
SSSDGGQPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1651936446388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G279900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3746130.0AK374613.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3070K03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574778.20.0auxin response factor 21
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLA0A0Q3M3D40.0A0A0Q3M3D4_BRADI; Auxin response factor
STRINGBRADI3G40437.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]