PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G282400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 166aa    MW: 18155.2 Da    PI: 6.5012
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G282400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.22.3e-37311301100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+Ca+dCvlap+fpa+ p+++a+vh++FGasnv++ll++lpe++r +a+++++ eAe r+rdPvyG++g+i++lq++++ ++
  Brast03G282400.1.p  31 RCAACKYLRRRCAADCVLAPHFPASLPQRYAAVHRVFGASNVSRLLQSLPEKKRGAAAETMAAEAEQRLRDPVYGCTGLISRLQEEIRDTQ 121
                         6****************************************************************************************** PP

              DUF260  92 aelallkee 100
                           la+++++
  Brast03G282400.1.p 122 CRLATTRAR 130
                         **9998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.00930131IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3731128IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MSASGNNNNY VEAEEDDYYQ QDEAGNGNGR RCAACKYLRR RCAADCVLAP HFPASLPQRY  60
AAVHRVFGAS NVSRLLQSLP EKKRGAAAET MAAEAEQRLR DPVYGCTGLI SRLQEEIRDT  120
QCRLATTRAR LAIVSSTAAT HKQQDHGQQV LLDPADEFLD LDGLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-33271217101LOB family transfactor Ramosa2.1
5ly0_B5e-33271217101LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G282400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171546.12e-56LOB domain-containing protein 24-like
TrEMBLA0A0Q3HZN04e-71A0A0Q3HZN0_BRADI; Uncharacterized protein
STRINGEMT015732e-57(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.12e-37LOB domain-containing protein 24