PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G289700.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

M-type_MADS

Protein Properties

Length: 119aa MW: 13950.9 Da PI: 10.4535

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G289700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	78.4	5.3e-25	34	82	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rie+ rqv fskRr g++KKA+ELSvLCd+eva+++fs+ g++y + Brast03G289700.1.p 34 RIEDRASRQVRFSKRRSGLFKKAFELSVLCDVEVALLVFSPAGRIYQFV 82 8*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.4E-31	25	84	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.399	25	85	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.71E-27	27	100	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-26	27	47	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-25	34	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-26	47	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-26	62	83	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MEEERRRRML QEKEAAHGHG GKERKKRGRV ELRRIEDRAS RQVRFSKRRS GLFKKAFELS 60 VLCDVEVALL VFSPAGRIYQ FVSSETSVEE IFGRCRDLPN AVNDLHIQVR DPRVDQDIQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	3e-17	27	85	3	61	Myocyte-specific enhancer factor 2B
1tqe_Q	3e-17	27	85	3	61	Myocyte-specific enhancer factor 2B
1tqe_R	3e-17	27	85	3	61	Myocyte-specific enhancer factor 2B
1tqe_S	3e-17	27	85	3	61	Myocyte-specific enhancer factor 2B
6c9l_A	3e-17	27	85	3	61	Myocyte-specific enhancer factor 2B
6c9l_B	3e-17	27	85	3	61	Myocyte-specific enhancer factor 2B
6c9l_C	3e-17	27	85	3	61	Myocyte-specific enhancer factor 2B
6c9l_D	3e-17	27	85	3	61	Myocyte-specific enhancer factor 2B
6c9l_E	3e-17	27	85	3	61	Myocyte-specific enhancer factor 2B
6c9l_F	3e-17	27	85	3	61	Myocyte-specific enhancer factor 2B
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	5	26	RRRMLQEKEAAHGHGGKERKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269\|PubMed:17951465}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G289700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF469336	1e-102	KF469336.1 Brachypodium distachyon MADS-box transcription factor 42 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001288324.1	8e-61	MADS-box transcription factor 7-like
Swissprot	Q9XJ61	1e-30	MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBL	I1I8X7	2e-59	I1I8X7_BRADI; MADS-box transcription factor 42
STRING	BRADI3G41297.1	3e-60	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11880.1	5e-24	AGAMOUS-like 14

Link Out ? help Back to Top
Phytozome	Brast03G289700.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SL,Lee S,Kim HJ,Nam HG,An G OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol., 2007. 145(4): p. 1484-94 [PMID:17951465]