PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G291700.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 258aa MW: 27329.6 Da PI: 10.0734

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G291700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	92	1e-28	26	167	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF+Ptdeelv +yL++k+ g +l++ v++++ ++++++Pwd + a+e e yfF+ r +++a ++ + at++g Wk g+++ Brast03G291700.1.p 26 LPPGFRFRPTDEELVLQYLRRKALGAPLPA-AVVPDLpRLHSLDPWDVL-APGAGEGEKYFFALRPSAAAGKRAAAAATENGWWKPEGRER 114 79**************************.7899998*****96.455677899**9988755555559********* PP NAM 91 evlsk....kgelvglkktLvfy..........kgrapkge.......ktdWvmheyrl 128 +v++ +++lvg+k+ L+f + + + W mheyrl Brast03G291700.1.p 115 AVVAVcrsgRSHLVGVKRALTFVprarrgkrgsS------SsspapalTAGWAMHEYRL 167 99888888889********88775553331......12233444789****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-36	24	195	IPR003441	NAC domain
PROSITE profile	PS51005	39.834	26	195	IPR003441	NAC domain
Pfam	PF02365	1.4E-19	27	167	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MESSPVVLAR QPQGQGEGQA EVLRALPPGF RFRPTDEELV LQYLRRKALG APLPAAVVPD 60 LPRLHSLDPW DVLAPGAGEG EKYFFALRPS AAAGKRAAAA ATENGWWKPE GRERAVVAVC 120 RSGRSHLVGV KRALTFVPRA RRGKRGSSSS SPAPALTAGW AMHEYRLALP PHHKNGCYLA 180 QSGSEEWVVC RVFRRDTRPS SSSRRHTLAG HATMPMPASP STSSSSSSSS STSSCVTSGG 240 SGSSSSDDDD LQEEASS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-24	25	197	16	167	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-24	25	197	16	167	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-24	25	197	16	167	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-24	25	197	16	167	NO APICAL MERISTEM PROTEIN
3swm_A	3e-24	25	197	19	170	NAC domain-containing protein 19
3swm_B	3e-24	25	197	19	170	NAC domain-containing protein 19
3swm_C	3e-24	25	197	19	170	NAC domain-containing protein 19
3swm_D	3e-24	25	197	19	170	NAC domain-containing protein 19
3swp_A	3e-24	25	197	19	170	NAC domain-containing protein 19
3swp_B	3e-24	25	197	19	170	NAC domain-containing protein 19
3swp_C	3e-24	25	197	19	170	NAC domain-containing protein 19
3swp_D	3e-24	25	197	19	170	NAC domain-containing protein 19
4dul_A	3e-24	25	197	16	167	NAC domain-containing protein 19
4dul_B	3e-24	25	197	16	167	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G291700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010235343.1	1e-125	NAC domain-containing protein 83
TrEMBL	I1I8Z8	1e-124	I1I8Z8_BRADI; Uncharacterized protein
STRING	BRADI3G41470.1	1e-125	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11818	31	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	1e-22	NAC domain containing protein 47

Link Out ? help Back to Top
Phytozome	Brast03G291700.1.p