PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G292200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 292aa    MW: 31540.2 Da    PI: 6.0947
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G292200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.3e-10131178455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR+ri +++  L++l+P +    +k   Ka iL + ++Y++sLq
  Brast03G292200.1.p 131 SHSLAERVRRERISERMRLLQTLVPGC----DKVTGKALILDEIINYVQSLQ 178
                         8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-17125193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.27E-11125182No hitNo description
Gene3DG3DSA:4.10.280.103.0E-16127191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.567127177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-7131178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-10133183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MADFSSSHHS LLLKMPAAFT TIDLSSPNIS SFLLHDQEGA ANASAAMVED GSLESSSAVL  60
DTSPQGSASV DRKRKASTAD DSSATLSSAH SKDCKDGKSR RGKREKSSTD QEEAPKGYIH  120
VRARRGQATD SHSLAERVRR ERISERMRLL QTLVPGCDKV TGKALILDEI INYVQSLQNQ  180
VEFLSMRIAS MSPVLYGFGL DSDGLLDQTQ KIGGMFQEAL ALPAAPVLNQ EHSPAPSQAM  240
MDTSSYSLQG QGAMSFSHQS QDNGSYLMQS AGEQRQELLN QLVFSNMCSF Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G292200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574844.10.0transcription factor bHLH137 isoform X1
TrEMBLI1I9070.0I1I907_BRADI; Uncharacterized protein
STRINGBRADI3G41510.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-47bHLH family protein