PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G299700.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

SRS

Protein Properties

Length: 329aa MW: 34040.6 Da PI: 8.5034

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G299700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	198.6	2e-61	92	231	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 gt+sCqdCGnqakkdC h+RCRtCCksrgfdCathvkstWvpaa+rrer++q aa + kr+r+ +++ s t++ss Brast03G299700.1.p 92 GGTISCQDCGNQAKKDCPHMRCRTCCKSRGFDCATHVKSTWVPAARRRERHHQPPAA---------PEPFKRPRDA----AAQPSPTTTSS 169 6899********************************************8777664.........5677899986....44555556666 PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154 + ++ ++ ++++P+evsseavfrcvr+++vd +++e+aYqt+vsigGhvfkGiL+d G+++ Brast03G299700.1.p 170 GGQQ-QMMAERFPREVSSEAVFRCVRLGGVDGegADAEVAYQTTVSIGGHVFKGILHDLGPDT 231 6555.677788***************98668999********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.2E-56	94	230	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.6E-27	96	138	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	7.8E-23	179	229	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009299	Biological Process	mRNA transcription
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MAGFPLGGGG GGHRGQQQQQ PPVTSTAQGG SEPAAFLYAG AQRGGFQLWP HHHPFYGGGA 60 SSSSIIRFAD DPAVAAGSSS SSRGGRGGSS GGGTISCQDC GNQAKKDCPH MRCRTCCKSR 120 GFDCATHVKS TWVPAARRRE RHHQPPAAPE PFKRPRDAAA QPSPTTTSSG GQQQMMAERF 180 PREVSSEAVF RCVRLGGVDG EGADAEVAYQ TTVSIGGHVF KGILHDLGPD TTSLGSGQHR 240 AEGSSPPSTA ASGAAAAVSS SAVVMDPYPT PGGPYGAYGG APFFHGHHHP SNGGDDAVPW 300 CMVSSRLLWL RFHAFAFHLN TPSFYTPS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:20706774}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00152	DAP	Transfer from AT1G19790	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G299700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010235381.1	1e-111	protein SHI RELATED SEQUENCE 2
Swissprot	Q9FXH7	2e-53	SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBL	A0A0Q3JLN6	1e-110	A0A0Q3JLN6_BRADI; Uncharacterized protein
STRING	BRADI3G42197.1	1e-102	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.2	3e-48	SHI-related sequence 7

Link Out ? help Back to Top
Phytozome	Brast03G299700.1.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]