PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G301100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 207aa    MW: 23520.2 Da    PI: 10.6658
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G301100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd++l   v+ +G g+W++ +r  g++R++k+c++rw +yl
  Brast03G301100.1.p 14 KGAWTREEDDRLSAHVRAHGEGRWRSLPRLAGLRRCGKSCRLRWTNYL 61
                        79********************************************97 PP
2Myb_DNA-binding50.16.1e-1667112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++++Ed l + +++ lG++ W+ Ia++++ gRt++++k++w+++l
  Brast03G301100.1.p  67 RGAFSADEDALVAALHAALGNR-WAMIAARLP-GRTDNEIKNYWNTHL 112
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.631961IPR017930Myb domain
SuperFamilySSF466892.28E-2713108IPR009057Homeodomain-like
SMARTSM007175.2E-121363IPR001005SANT/Myb domain
PfamPF002497.3E-141461IPR001005SANT/Myb domain
CDDcd001675.92E-91661No hitNo description
PROSITE profilePS5129425.18662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2565116IPR009057Homeodomain-like
SMARTSM007175.3E-1566114IPR001005SANT/Myb domain
PfamPF002493.9E-1467112IPR001005SANT/Myb domain
CDDcd001671.06E-687112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGRSPCCEKA HTTKGAWTRE EDDRLSAHVR AHGEGRWRSL PRLAGLRRCG KSCRLRWTNY  60
LRPDLKRGAF SADEDALVAA LHAALGNRWA MIAARLPGRT DNEIKNYWNT HLRKRLMGMG  120
IDPVTHRPVV VGDGEMMPVP ETERKKKAAP RCHGLNLELR ISPPWQQEEE SRPPVKKEET  180
TRQMLQGGDL LGLRAGMLEF RRIEMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-281311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G301100.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574896.11e-108myb-related protein Zm38
SwissprotP200251e-83MYB38_MAIZE; Myb-related protein Zm38
TrEMBLI1I9A41e-107I1I9A4_BRADI; Uncharacterized protein
STRINGBRADI3G42350.11e-107(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.14e-78myb domain protein 7
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]