PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G304100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 468aa    MW: 51746.4 Da    PI: 8.784
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G304100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.43.6e-082676153
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53
                        ++++GVr    +gr+ A +++ +  n+k +++++g+++tae+Aa a+ aa+ ++
  Brast03G304100.1.p 26 PRFTGVRKLA-SGRYTAVLYHsV--NKKGTTVHVGTYDTAEQAAGARAAAKIAM 76
                        6799***887.8******99955..3355************9999999998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-42673IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-62777IPR016177DNA-binding domain
PROSITE profilePS510329.7432786IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-72779IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000212Biological Processmeiotic spindle organization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007140Biological Processmale meiosis
GO:0009553Biological Processembryo sac development
GO:0009555Biological Processpollen development
GO:0042138Biological Processmeiotic DNA double-strand break formation
GO:0048236Biological Processplant-type spore development
GO:0051026Biological Processchiasma assembly
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MAPPGTVSSP NPGGSSSNGG GGGTEPRFTG VRKLASGRYT AVLYHSVNKK GTTVHVGTYD  60
TAEQAAGARA AAKIAMASAA SSRAPPPPQM PWISTTSSSR IDSPSLKAAL AMALVHHKRL  120
PAPAGAAAAA PSNSPPLVRW KRKAKDRKRE ILRLREELKL LQDGARREEL EPPVASCRCH  180
FFDGCGSLPP PGGGEHWVDE VLRRRFLRLA RWMEKRRRPD RSLPVSGSLE FNREDEIQQL  240
SLSTDFLVEL SDGIFTKKEA GSSFSTFSHQ AVDFILATLR NILLSKREKE LVEEIIEGLV  300
ACLMKRMCTI PENTGTSDSG SVECSDAQFS VQHLFRKLGN EEFIGQRIIL AVSQKISNVS  360
ERLLLADPFD GSFPDMHDNM FIMIQLIEFL ISDYMKHWLC CEQFDKKIFE EWARSILKTR  420
KDLEVLENIN GLYVVYIERV VGRLAREVAP AAHQGKMDLE VFSKLLC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141149RKAKDRKRE
2202217RRRFLRLARWMEKRRR
3203218RRFLRLARWMEKRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G304100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755693.10.0protein MULTIPOLAR SPINDLE 1 isoform X1
TrEMBLA0A2K2D2R00.0A0A2K2D2R0_BRADI; Uncharacterized protein
STRINGBRADI3G42627.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP903422