PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G304200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 185aa    MW: 18838.8 Da    PI: 9.9608
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G304200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000164769123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C ++F ++  L  H++ H
  Brast03G304200.1.p 47 FSCTYCRRRFYSSQALGGHQNAH 69
                        89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.6E-44372IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.02E-64374No hitNo description
PROSITE profilePS5015711.0324774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MERAGEVNLD LRLLHQSTVA RSRQHAPMPV PALQGSVAAE GGGDRSFSCT YCRRRFYSSQ  60
ALGGHQNAHK LERSLAKRSR DLSSAVAGIA AGAASSSSSS QPSPADLMII GSSSWYPPPP  120
PRGSSGSGSD RVVVDGAAAS GSSAASAAAA VVSWIADGGA GRRRHGGYRV HGAEDDGIDL  180
SLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G304200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039282e-52AP003928.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1150_A11.
GenBankAP0054802e-52AP005480.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0439B07.
GenBankAP0149642e-52AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126162e-52CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236785.11e-69zinc finger protein GIS3
TrEMBLA0A0Q3FM902e-68A0A0Q3FM90_BRADI; Uncharacterized protein
STRINGORUFI08G25750.11e-33(Oryza rufipogon)
STRINGOS08T0555700-001e-33(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.12e-17zinc finger protein 2