PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G310200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 120aa    MW: 13247.5 Da    PI: 8.4433
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G310200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.3e-211162155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++y+GVr+++ +g+++AeIrd      ++ r++lg+f+taeeAa+a+++a+ +++g
  Brast03G310200.1.p 11 TKYRGVRRRP-SGKYAAEIRDS---SrQSVRVWLGTFDTAEEAARAYDRAAYAMRG 62
                        69********.7*********3...2236*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-161162IPR001471AP2/ERF domain
CDDcd000187.74E-191171No hitNo description
Gene3DG3DSA:3.30.730.109.8E-311271IPR001471AP2/ERF domain
SMARTSM003805.1E-341276IPR001471AP2/ERF domain
PROSITE profilePS5103223.0241270IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-231271IPR016177DNA-binding domain
PRINTSPR003672.7E-101324IPR001471AP2/ERF domain
PRINTSPR003672.7E-103652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MDGDQGGGEA TKYRGVRRRP SGKYAAEIRD SSRQSVRVWL GTFDTAEEAA RAYDRAAYAM  60
RGQLAVLNFP AEARNYVRGG SSSSSSRQQQ VIELECLDDE VLQEMLRDDP QRRSGGKNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-3241012114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G310200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571268.14e-65ethylene-responsive transcription factor 14
SwissprotQ9LSX06e-32ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBLI1I0301e-63I1I030_BRADI; Uncharacterized protein
STRINGBRADI3G12565.12e-64(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.11e-23Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]