PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G311400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 219aa    MW: 23556.2 Da    PI: 8.4602
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G311400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-193989155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        + ++GVr++  +g+WvAeIr+p   + r +r +lg+f ta +Aa+a++aa+k+l+g
  Brast03G311400.1.p 39 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFSTALDAARAYDAAAKALYG 89
                        679****999.**********8...3.35************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.6E-3340103IPR001471AP2/ERF domain
PROSITE profilePS5103220.6924097IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-284197IPR001471AP2/ERF domain
PfamPF008471.2E-124189IPR001471AP2/ERF domain
CDDcd000184.51E-154172No hitNo description
SuperFamilySSF541717.85E-204197IPR016177DNA-binding domain
PRINTSPR003671.4E-94152IPR001471AP2/ERF domain
PRINTSPR003671.4E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MERAARRSNN GSGSRKCCPL RRSRKGCMKG KGGPENQRCP FRGVRQRTWG KWVAEIREPN  60
RGARLWLGTF STALDAARAY DAAAKALYGD CARLNLAPNP NPPPAAPPKS SSSGSTTTTQ  120
LQSSSSNYDY DYFNGNGNGG WVSAAAPPVA EEEDFETYVT RLPKPEDFGL QAFLPLEVLA  180
DEASSSSAAQ AQAQAPGNVS IWEISSFEFV PDMLPLAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-144196662ATERF1
3gcc_A5e-144196662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G311400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1081433e-82AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence.
GenBankAP0046233e-82AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05.
GenBankAP0054113e-82AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16.
GenBankAP0149643e-82AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3393753e-82AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds.
GenBankCP0126163e-82CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571275.13e-77dehydration-responsive element-binding protein 2C
SwissprotQ84ZA11e-71DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLI1I0488e-76I1I048_BRADI; Uncharacterized protein
STRINGBRADI3G12680.11e-76(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.14e-27ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]